Carron Leopold, Morlot Jean-Baptiste, Lesne Annick, and Mozziconacci Julien. 2021. “The 3D Organization of Chromatin Colors in Mammalian Nuclei”. Methods in Molecular Biology, January. {Humana Press/Springer Imprint}. https://hal.archives-ouvertes.fr/hal-03172656.
Mozziconacci Julien, Merle Mélody, and Lesne Annick. 2019. “The 3D Genome Shapes the Regulatory Code of Developmental Genes”. Journal of Molecular Biology, November. {Elsevier}. doi:10.1016/j.jmb.2019.10.017.
Routhier Etienne, Pierre Edgard, Khodabandelou Ghazaleh, and Mozziconacci Julien. 2021. “Genome-Wide Prediction of DNA Mutation Effect on Nucleosome Positions for Yeast Synthetic Genomics”. Genome Research 31 (March). {Cold Spring Harbor Laboratory Press}: 317-26. doi:10.1101/gr.264416.120.
Cournac Axel, Marbouty Martial, Mozziconacci Julien, and Koszul Romain. 2016. “Generation and Analysis of Chromosomal Contact Maps of Yeast Species”. Methods in Molecular Biology 1361 (January). {Humana Press/Springer Imprint}: 227-45. doi:10.1007/978-1-4939-3079-1_13.
Hubstenberger Arnaud, Courel Maïté, Bénard Marianne, Souquère Sylvie, Ernoult-Lange Michèle M., Chouaib Racha, Yi Zhou, et al. 2017. “P-Body Purification Reveals the Condensation of Repressed MRNA Regulons”. Molecular Cell 68 (October). {Elsevier}: 144-157.e5. doi:10.1016/j.molcel.2017.09.003.
Bancaud Aurélien, Wagner Gaudeline, Conde E Silva Natalia, Lavelle Christophe, Wong Hua, Mozziconacci Julien, Barbi Maria, et al. 2007. “Nucleosome Chiral Transition under Positive Torsional Stress in Single Chromatin Fibers”. Molecular Cell 27 (July). {Elsevier}: 135-47. doi:10.1016/j.molcel.2007.05.037.
Marbouty Martial, Cournac Axel, Flot Jean-François, Marie-Nelly Hervé, Mozziconacci Julien, and Koszul Romain. 2014. “Metagenomic Chromosome Conformation Capture (meta3C) Unveils the Diversity of Chromosome Organization in Microorganisms”. ELife 3 (December). {eLife Sciences Publication}: e03318. doi:10.7554/eLife.03318.
Marbouty Martial, Le Gall Antoine, Cattoni Diego I, Cournac Axel, Koh Alan, Fiche Jean-Bernard, Mozziconacci Julien, et al. 2015. “Condensin- and Replication-Mediated Bacterial Chromosome Folding and Origin Condensation Revealed by Hi-C and Super-Resolution Imaging”. Molecular Cell 59 (August). {Elsevier}: 588-602. doi:10.1016/j.molcel.2015.07.020.
Guidi Micol, Ruault Myriam, Marbouty Martial, Loïodice Isabelle, Cournac Axel, Billaudeau Cyrille, Hocher Antoine, Mozziconacci Julien, Koszul Romain, and Taddei Angela. 2015. “Spatial Reorganization of Telomeres in Long-Lived Quiescent Cells”. Genome Biology 16 (September). {BioMed Central}: 206. doi:10.1186/s13059-015-0766-2.
Cournac Axel, Marie-Nelly Hervé, Marbouty Martial, Koszul Romain, and Mozziconacci Julien. 2012. “Normalization of a Chromosomal Contact Map”. BMC Genomics 13 (January). {BioMed Central}: 436. doi:10.1186/1471-2164-13-436.
Lesne Annick, Riposo Julien, Roger Paul, Cournac Axel, and Mozziconacci Julien. 2014. “3D Genome Reconstruction from Chromosomal Contacts”. Nature Methods 11 (January). {Nature Publishing Group}: 1141-43. doi:10.1038/NMETH.3104.
Khodabandelou Ghazaleh, Routhier Etienne, and Mozziconacci Julien. 2020. “Distributed under Creative Commons CC-BY 4.0 Genome Annotation across Species Using Deep Convolutional Neural Networks”. PeerJ Computer Science 6 (June). {PeerJ}: e278. doi:10.7717/peerj-cs.278.
Scolari Vittore F, Mercy Guillaume, Koszul Romain, Lesne Annick, and Mozziconacci Julien. 2018. “Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer”. Physical Review Letters 121 (August). {American Physical Society}: 057801. doi:10.1103/PhysRevLett.121.057801.
Mercy Guillaume, Mozziconacci Julien, Scolari Vittore F, Yang Kun, Zhao Guanghou, Thierry Agnès, Luo Yi, et al. 2017. “3D Organization of Synthetic and Scrambled Chromosomes”. Science 355 (March). {American Association for the Advancement of Science}: eaaf4597. doi:10.1126/science.aaf4597.
Albert Benjamin, Mathon Julien, Shukla Ashutosh, Saad Hicham, Normand Christophe, Léger-Silvestre Isabelle, Villa David, et al. 2013. “Systematic Characterization of the Conformation and Dynamics of Budding Yeast Chromosome XII”. Journal of Cell Biology 202 (January). {Rockefeller University Press}: 201-10. doi:10.1083/jcb.201208186.
Lazar-Stefanita Luciana, Scolari Vittore F, Mercy Guillaume, Muller Héloïse, Guérin Thomas M M, Thierry Agnès, Mozziconacci Julien, and Koszul Romain. 2017. “Cohesins and Condensins Orchestrate the 4D Dynamics of Yeast Chromosomes During the Cell cycle”. EMBO Journal 36 (September). {EMBO Press}: 2684-97. doi:10.15252/embj.201797342.
Mozziconacci Julien, and Koszul Romain. 2015. “Filling the Gap: Micro-C Accesses the Nucleosomal Fiber at 100-1000 Bp Resolution”. Genome Biology 16 (August). {BioMed Central}: 169. doi:10.1186/s13059-015-0744-8.
Barbi Maria, Mozziconacci Julien, and Victor Jean-Marc. 2005. “How Does the Chromatin Fiber Deal With Topological Constraints?”. Physical Review E : Statistical, Nonlinear, and Soft Matter Physics 71 (January). {American Physical Society}: 031910. doi:10.1103/PhysRevE.71.031910.
Lesne Annick, and Mozziconacci Julien. 2019. “Formes Mathématiques, Formes Physiques, Formes Vivantes”. In Le Rêve de Formes. Arts, Sciences . Et Cie,. {Le Seuil}. https://hal.archives-ouvertes.fr/hal-02308929.
Morlot Jean-Baptiste, Mozziconacci Julien, and Lesne Annick. 2016. “Network Concepts for Analyzing 3D Genome Structure from Chromosomal Contact Maps”. EPJ Nonlinear Biomedical Physics 4 (December). {EDP Sciences}. doi:10.1140/epjnbp/s40366-016-0029-5.