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Le laboratoire Structure et Instabilité des génomes UMR 7196 / U1154 est une unité mixte de recherche sous la co-tutelle du Muséum national d'Histoire naturelle, du Centre national de la Recherche Scientifique (CNRS), et de l’Institut national de la santé et de la recherche médicale (Inserm).
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UMR 7196 - U1154 - Structure et Instabilité des Génomes
UMR 7196 - U1154

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Bignaud Amaury, Cockram Charlotte, Borde Céline, Groseille Justine, Allemand Eric, Thierry Agnès, Marbouty Martial, Mozziconacci Julien, Espéli Olivier & Koszul Romain, January 2024 — Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes. Nature Structural and Molecular Biology , ,
https://dx.doi.org/10.1038/s41594-023-01178-2
Luo Jingchuan, Vale-Silva Luis A, Raghavan Adhithi R, Mercy Guillaume, Heldrich Jonna, Sun Xiaoji, Li Mingyu Kenneth, Zhang Weimin, Agmon Neta, Yang Kun, Cai Jitong, Stracquadanio Giovanni, Thierry Agnès, Zhao Yu, Coelho Camila et al., November 2023 — Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function. Cell Genomics vol. 3, n° 11, p. 100439
https://dx.doi.org/10.1016/j.xgen.2023.100439
Westbrook Alex, Routhier Etienne, Mozziconacci Julien, Koszul Romain & Boulé Jean-Baptiste, November 2023 — Nucleosome positioning in yeast: from prediction to synthetic design. , , Poster
https://mnhn.hal.science/mnhn-04344672
Carron Léoplod, Concia Lorenzo, Grob Stefan, Barneche Fredy, Carbone Alessandra & Mozziconacci Julien, November 2023 — A layer cake model for plant and metazoan chromatin. , , working paper or preprint
https://dx.doi.org/10.1101/2023.02.24.529851
Routhier Ethienne, Joubert Alexandra, Westbrook Alex, Pierre Edgar, Lancrey Astrid, Cariou Marie, Boulé Jean-Baptiste & Mozziconacci Julien, 2023 — In silico design of DNA sequences for in vivo nucleosome positioning. Nucleic Acids Research vol. 52, n° 12,
https://dx.doi.org/10.1093/nar/gkae468
Lazar-Stefanita Luciana, Luo Jingchuan, Montagne Remi, Thierry Agnes, Sun Xiaoji, Mercy Guillaume, Mozziconacci Julien, Koszul Romain & Boeke Jef D, August 2022 — Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts. Cell Genomics vol. 2, n° 8, p. 100163
https://dx.doi.org/10.1016/j.xgen.2022.100163
Routhier Etienne & Mozziconacci Julien, June 2022 — Genomics enters the deep learning era. PeerJ vol. 10, , e13613
https://dx.doi.org/10.7717/peerj.13613
Lancrey Astrid, Joubert Alexandra, Duvernois-Berthet Evelyne, Routhier Etienne, Raj Saurabh, Thierry Agnès, Sigarteu Marta, Ponger Loic, Croquette Vincent, Mozziconacci Julien & Boulé Jean-Baptiste, April 2022 — Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae. Journal of Molecular Biology , ,
https://dx.doi.org/10.1016/j.jmb.2022.167497
Jablonski Kim Philipp, Carron Leopold, Mozziconacci Julien, Forné Thierry, Hütt Marc-Thorsten & Lesne Annick, January 2022 — Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study. Human Genomics vol. 16, n° 1, dir. {BioMed Central} p. 2
https://dx.doi.org/10.1186/s40246-022-00375-2
Carron Leopold, Morlot Jean-Baptiste, Lesne Annick & Mozziconacci Julien, 2022 — The 3D organization of chromatin colors in mammalian nuclei. Methods in Molecular Biology vol. 2301, , p. 317-336
https://dx.doi.org/10.1007/978-1-0716-1390-0\_17
Haschka Thomas, Baptiste Morlot Jean, Carron Leopold & Mozziconacci Julien, July 2021 — Improving distance measures between genomic tracks with mutual proximity. Briefings in Bioinformatics , , dir. {Oxford University Press (OUP)}
https://dx.doi.org/10.1093/bib/bbab266
Decombe Sheldon, Loll François, Caccianini Laura, Affannoukoué Kévin, Izeddin Ignacio, Mozziconacci Julien, Escudé Christophe & Lopes Judith, July 2021 — Epigenetic rewriting at centromeric DNA repeats leads to increased chromatin accessibility and chromosomal instability. Epigenetics & Chromatin vol. 14, n° 1, dir. {BioMed Central}
https://dx.doi.org/10.1186/s13072-021-00410-x
Haschka Thomas, Ponger Loic, Escude Christophe & Mozziconacci Julien, June 2021 — MNHN-Tree-Tools: A toolbox for tree inference using multi-scale clustering of a set of sequences. Bioinformatics , , dir. {Oxford University Press (OUP)}
https://dx.doi.org/10.1093/bioinformatics/btab430
Routhier Etienne, Pierre Edgard, Khodabandelou Ghazaleh & Mozziconacci Julien, March 2021 — Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics. Genome Research vol. 31, n° 2, dir. {Cold Spring Harbor Laboratory Press} p. 317-326
https://dx.doi.org/10.1101/gr.264416.120
Carron Leopold, Morlot Jean-Baptiste, Lesne Annick & Mozziconacci Julien, 2021 — The 3D organization of chromatin colors in mammalian nuclei. Methods in Molecular Biology , , dir. {Humana Press/Springer Imprint}
https://hal.archives-ouvertes.fr/hal-03172656
Khodabandelou Ghazaleh, Routhier Etienne & Mozziconacci Julien, June 2020 — Distributed under Creative Commons CC-BY 4.0 Genome annotation across species using deep convolutional neural networks. PeerJ Computer Science vol. 6, , dir. {PeerJ} e278
https://dx.doi.org/10.7717/peerj-cs.278
Mozziconacci Julien, Merle Mélody & Lesne Annick, November 2019 — The 3D genome shapes the regulatory code of developmental genes. Journal of Molecular Biology , , dir. {Elsevier}
https://dx.doi.org/10.1016/j.jmb.2019.10.017
Merle Mélody, Messio Laura & Mozziconacci Julien, October 2019 — Turing-like patterns in an asymmetric dynamic Ising model. Physical Review E vol. 100, n° 4, dir. {American Physical Society (APS)}
https://dx.doi.org/10.1103/PhysRevE.100.042111
Lesne Annick & Mozziconacci Julien, April 2019 — « Formes mathématiques, formes physiques, formes vivantes » in Le Rêve de Formes. Arts, Sciences ... et Cie,.. , , dir. {Le Seuil}
https://hal.archives-ouvertes.fr/hal-02308929
Baudement Marie, Cournac Axel, Court Franck, Seveno Marie, Parrinello Hugues, Reynes Christelle, Sabatier Robert, Bouschet Tristan, Yi Zhou, Sallis Sephora, Tancelin Mathilde, Rebouissou Cosette, Cathala Guy, Lesne Annick, Mozziconacci Julien et al., November 2018 — High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies. Genome Research vol. 28, n° 11, dir. {Cold Spring Harbor Laboratory Press} p. 1733-1746
https://dx.doi.org/10.1101/gr.237073.118
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