, December 2022 — Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery. BMC Genomics vol. 23, n° 1, dir. {BioMed Central} p. 485
, September 2022 — DNA methylome combined with chromosome cluster-oriented analysis provides an early signature for cutaneous melanoma aggressiveness. eLife vol. 11, , e78587
, August 2022 — Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts. Cell Genomics vol. 2, n° 8, p. 100163
, April 2022 — Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae. Journal of Molecular Biology , ,
, January 2022 — Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study. Human Genomics vol. 16, n° 1, dir. {BioMed Central} p. 2
, July 2021 — Improving distance measures between genomic tracks with mutual proximity. Briefings in Bioinformatics , , dir. {Oxford University Press (OUP)}
, July 2021 — Epigenetic rewriting at centromeric DNA repeats leads to increased chromatin accessibility and chromosomal instability. Epigenetics & Chromatin vol. 14, n° 1, dir. {BioMed Central}
, June 2021 — MNHN-Tree-Tools: A toolbox for tree inference using multi-scale clustering of a set of sequences. Bioinformatics , , dir. {Oxford University Press (OUP)}
, March 2021 — Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics. Genome Research vol. 31, n° 2, dir. {Cold Spring Harbor Laboratory Press} p. 317-326
, 2021 — The 3D organization of chromatin colors in mammalian nuclei. Methods in Molecular Biology , , dir. {Humana Press/Springer Imprint}
, June 2020 — Distributed under Creative Commons CC-BY 4.0 Genome annotation across species using deep convolutional neural networks. PeerJ Computer Science vol. 6, , dir. {PeerJ} e278
, 2020 — A comprehensive, genus-level time-calibrated phylogeny of the tree flora of Mediterranean Europe and an assessment of its vulnerability. Botany Letters vol. 167, n° 2, dir. {Taylor \& Francis} p. 276-289
, November 2019 — The 3D genome shapes the regulatory code of developmental genes. Journal of Molecular Biology , , dir. {Elsevier}
, October 2019 — Turing-like patterns in an asymmetric dynamic Ising model. Physical Review E vol. 100, n° 4, dir. {American Physical Society (APS)}
, April 2019 — « Formes mathématiques, formes physiques, formes vivantes » in Le Rêve de Formes. Arts, Sciences ... et Cie,.. , , dir. {Le Seuil}
, November 2018 — High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies. Genome Research vol. 28, n° 11, dir. {Cold Spring Harbor Laboratory Press} p. 1733-1746
, August 2018 — Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer. Physical Review Letters vol. 121, n° 5, dir. {American Physical Society} p. 057801
, July 2018 — Characterizing meiotic chromosomes’ structure and pairing using a designer sequence optimized for Hi-C. Molecular Systems Biology vol. 14, n° 7, dir. {EMBO Press} e8293
, March 2018 — Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins. Cell vol. 172, n° 4, dir. {Elsevier} 771–783.e18
, 2018 — The Targeted Sequencing of Alpha Satellite DNA in Cercopithecus pogonias Provides New Insight Into the Diversity and Dynamics of Centromeric Repeats in Old World Monkeys. Genome Biology and Evolution vol. 10, n° 7, dir. {Society for Molecular Biology and Evolution} p. 1837-1851