AASPE is a laboratory under the dual supervision of the CNRS (INEE) and the National Museum of Natural History.
List of publications
, January 2022 — Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study. Human Genomics. Vol. 16, n° 1, dir. BioMed Central, p. 2.
, April 2022 — Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae. Journal of Molecular Biology. Dir. Elsevier.
, June 2021 — Transcription-associated topoisomerase 2α activity is a major effector of cytotoxicity induced by G-quadruplex ligands. G-quadruplexes (G4) are non-canonical DNA structures found in the genome
of most species including human. Small molecules... eLife. Vol. 10, dir. eLife Sciences Publications, Ltd, e65184.
ISSN:
2050-084X
, 2021 — The 3D organization of chromatin colors in mammalian nuclei. Methods in Molecular Biology. Dir. Humana Press/Springer Imprint.
, July 2021 — GGGCTA repeats can fold into hairpins poorly unfolded by replication protein A: a possible origin of the length-dependent instability of GGGCTA variant repeats in human telomeres. Nucleic Acids Research. Dir. Oxford University Press.
, September 2021 — Multiple hPOT1–TPP1 cooperatively unfold contiguous telomeric G-quadruplexes proceeding from 3’ toward 5’, a feature due to a 3’-end binding preference and to structuring of telomeric DNA. Nucleic Acids Research. Vol. 49, dir. Oxford University Press, p. 10735-10746.
, July 2021 — Epigenetic rewriting at centromeric DNA repeats leads to increased chromatin accessibility and chromosomal instability. Epigenetics & Chromatin. Vol. 14, n° 1, dir. BioMed Central.
, December 2021 — « Tagging Proteins with Fluorescent Reporters Using the CRISPR/Cas9 System and Double-Stranded DNA Donors » in Multiprotein Complexes. P. 39-57.
, July 2021 — Improving distance measures between genomic tracks with mutual proximity. Briefings in Bioinformatics. Dir. Oxford University Press (OUP).
, June 2021 — MNHN-Tree-Tools: A toolbox for tree inference using multi-scale clustering of a set of sequences. Bioinformatics. Dir. Oxford University Press (OUP).
, December 2021 — Mechanisms and Regulation of Cellular Senescence. International Journal of Molecular Sciences. Vol. 22, n° 23, dir. MDPI, p. 13173.
, March 2021 — Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics. Genome Research. Vol. 31, n° 2, dir. Cold Spring Harbor Laboratory Press, p. 317-326.
, January 2021 — Effect of DNA repair inhibitor AsiDNA on the incidence of telomere fusion in crisis. Human Molecular Genetics. Dir. Oxford University Press (OUP).
, 2021 — Folding and persistence times of intramolecular G-quadruplexes transiently embedded in a DNA duplex. Nucleic Acids Research. Dir. Oxford University Press.
, December 2020 — CD57+ Memory T Cells Proliferate In Vivo. Cell Reports. Vol. 33, n° 11, dir. Elsevier Inc, p. 108501.
, April 2020 — Transcriptome comparison of a natural T3 regulated process and a treatment with T3. Journal of the Endocrine Society. Vol. 4, Supplement_1, dir. Oxford University Press.
, 2020 — A comprehensive, genus-level time-calibrated phylogeny of the tree flora of Mediterranean Europe and an assessment of its vulnerability. Botany Letters. Vol. 167, n° 2, dir. Taylor \& Francis, p. 276-289.
, July 2020 — Genome wide distribution of G-quadruplexes and their impact on gene expression in malaria parasites. PLoS Genetics. Vol. 16, n° 7, dir. Public Library of Science, e1008917.
, December 2020 — PfGBP2 is a novel G-quadruplex binding protein in Plasmodium falciparum. Cellular Microbiology. Dir. Wiley.
, June 2020 — Distributed under Creative Commons CC-BY 4.0 Genome annotation across species using deep convolutional neural networks. PeerJ Computer Science. Vol. 6, dir. PeerJ, e278.