janvier 2024 — Transcription-induced domains form the elementary constraining building blocks of bacterial chromosomes. Nature Structural and Molecular Biology , ,
,
janvier 2024 — Comparative transcriptomics reveal a novel tardigrade specific DNA binding protein induced in response to ionizing radiation. eLife , ,
,
2024 — Comparative transcriptomics reveal a novel tardigrade-specific DNA-binding protein induced in response to ionizing radiation. Elife vol. 13, , RP92621
, novembre 2023 — Synthetic chromosome fusion: Effects on mitotic and meiotic genome structure and function. Cell Genomics vol. 3, n° 11, p. 100439
,
novembre 2023 — Nucleosome positioning in yeast: from prediction to synthetic design. , , Poster
,
novembre 2023 — A layer cake model for plant and metazoan chromatin. , , working paper or preprint
,
2023 — Introducing Diinamic, a flexible and robust method for clustering analysis in single-molecule localization microscopy. Biological Imaging vol. 3, , e14
,
2023 — In silico design of DNA sequences for in vivo nucleosome positioning. Nucleic Acids Research vol. 52, n° 12,
,
décembre 2022 — Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery. BMC Genomics vol. 23, n° 1, dir. {BioMed Central} p. 485
,
septembre 2022 — DNA methylome combined with chromosome cluster-oriented analysis provides an early signature for cutaneous melanoma aggressiveness. eLife vol. 11, , e78587
,
août 2022 — Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts. Cell Genomics vol. 2, n° 8, p. 100163
,
juin 2022 — Genomics enters the deep learning era. PeerJ vol. 10, , e13613
,
avril 2022 — Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae. Journal of Molecular Biology , ,
,
janvier 2022 — Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study. Human Genomics vol. 16, n° 1, dir. {BioMed Central} p. 2
,
2022 — The 3D organization of chromatin colors in mammalian nuclei. Methods in Molecular Biology vol. 2301, , p. 317-336
,
juillet 2021 — Improving distance measures between genomic tracks with mutual proximity. Briefings in Bioinformatics , , dir. {Oxford University Press (OUP)}
,
juillet 2021 — Epigenetic rewriting at centromeric DNA repeats leads to increased chromatin accessibility and chromosomal instability. Epigenetics & Chromatin vol. 14, n° 1, dir. {BioMed Central}
,
juin 2021 — MNHN-Tree-Tools: A toolbox for tree inference using multi-scale clustering of a set of sequences. Bioinformatics , , dir. {Oxford University Press (OUP)}
,
mars 2021 — Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics. Genome Research vol. 31, n° 2, dir. {Cold Spring Harbor Laboratory Press} p. 317-326
,
2021 — The 3D organization of chromatin colors in mammalian nuclei. Methods in Molecular Biology , , dir. {Humana Press/Springer Imprint}
,