Les tutelles
MNHN - CNRS - Inserm
Liste des publications
Janvier 2022 — Contribution of 3D genome topological domains to genetic risk of cancers: a genome-wide computational study. Human Genomics. Vol. 16, n° 1, dir. BioMed Central, p. 2.
, 2021 — The 3D organization of chromatin colors in mammalian nuclei. Methods in Molecular Biology. Dir. Humana Press/Springer Imprint.
, Juillet 2021 — Epigenetic rewriting at centromeric DNA repeats leads to increased chromatin accessibility and chromosomal instability. Epigenetics
& Chromatin. Vol. 14, n° 1, dir. BioMed Central.
, Juillet 2021 — Improving distance measures between genomic tracks with mutual proximity. Briefings in Bioinformatics. Dir. Oxford University Press (OUP).
, Juin 2021 — MNHN-Tree-Tools: A toolbox for tree inference using multi-scale clustering of a set of sequences. Bioinformatics. Dir. Oxford University Press (OUP).
, Mars 2021 — Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics. Genome Research. Vol. 31, n° 2, dir. Cold Spring Harbor Laboratory Press, p. 317-326.
, 2020 — A comprehensive, genus-level time-calibrated phylogeny of the tree flora of Mediterranean Europe and an assessment of its vulnerability. Botany Letters. Vol. 167, n° 2, dir. Taylor \\& Francis, p. 276-289.
, Juin 2020 — Distributed under Creative Commons CC-BY 4.0 Genome annotation across species using deep convolutional neural networks. PeerJ Computer Science. Vol. 6, dir. PeerJ, e278.
, Avril 2019 — « Formes mathématiques, formes physiques, formes vivantes » in Le Rêve de Formes. Arts, Sciences ... et Cie,. Dir. Le Seuil.
, Octobre 2019 — Turing-like patterns in an asymmetric dynamic Ising model. Physical Review E. Vol. 100, n° 4, dir. American Physical Society (APS).
, Novembre 2019 — The 3D genome shapes the regulatory code of developmental genes. Journal of Molecular Biology. Dir. Elsevier.
, Novembre 2018 — High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies. Genome Research. Vol. 28, n° 11, dir. Cold Spring Harbor Laboratory Press, p. 1733-1746.
, 2018 — The Targeted Sequencing of Alpha Satellite DNA in Cercopithecus pogonias Provides New Insight Into the Diversity and Dynamics of Centromeric Repeats in Old World Monkeys. Genome Biology and Evolution. Vol. 10, n° 7, dir. Society for Molecular Biology and Evolution, p. 1837-1851.
, Février 2018 — Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins. Cell. Vol. 172, n° 4, dir. Elsevier, 771–783.e18.
, Juillet 2018 — Characterizing meiotic chromosomes’ structure and pairing using a designer sequence optimized for Hi-C. Molecular Systems Biology. Vol. 14, n° 7, dir. EMBO Press, e8293.
, Août 2018 — Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer. Physical Review Letters. Vol. 121, n° 5, dir. American Physical Society, p. 057801.
, Octobre 2017 — P-Body Purification Reveals the Condensation of Repressed mRNA Regulons. Molecular Cell. Vol. 68, n° 1, dir. Elsevier, 144-157.e5.
, Septembre 2017 — Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle. EMBO Journal. Vol. 36, n° 18, dir. EMBO Press, p. 2684-2697.
, Mars 2017 — 3D organization of synthetic and scrambled chromosomes. Science. Vol. 355, n° 6329, dir. American Association for the Advancement of Science, eaaf4597.
, 2016 — Diversity and distribution of alpha satellite DNA in the genome of an Old World monkey: Cercopithecus solatus. BMC Genomics. Vol. 17, dir. BioMed Central, p. 916.
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